Basic Information
VIS ID
TVIS10015812
Fusion event
HBV-chr9 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
118863578/116101299 (Hg38)
End
118863578/116101299 (Hg38)
Orient
+
Fragile sites / regions
FRA9E ; FRA9B
Nearest miRNA
hsa-let-7a-1/Upstream/1891770; hsa-mir-12126/Downstream/4143680;
Nearest TSS
ENST00000422679/Upstream/88938; ENST00000460463/Downstream/52505;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1489503, chr9-CpG: 77/Downstream/52784
Nearby gene
PAPPA ;
Upstream sequence
AACTAAGAAACTTCTAAATAAATCACATTGAATGA
Junction sequence
AACTAAGAAACTTCTAAATAAATCACATTGAATGATAAAAAGAAGTTACATGGTGCTGGTGAACACACCAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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