Basic Information
VIS ID
TVIS10015816
Fusion event
HBV-chr17 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
65362880/67366764 (Hg38)
End
65362880/67366764 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10226/Upstream/579596; hsa-mir-1250/Downstream/104725;
Nearest TSS
ENST00000595228/Upstream/137; ENST00000584471/Downstream/10517;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/43, chr17-CpG: 170/Downstream/10344
Nearby gene
PSMD12 ;
Upstream sequence
GAGATGGTCTGTTCTATTACACTCGCTTTTCTCATCGCAAATTTTAGGTAAAAAGTCT
Junction sequence
GAGATGGTCTGTTCTATTACACTCGCTTTTCTCATCGCAAATTTTAGGTAAAAAGTCTCCTCCCCCAACTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate