hsa-mir-130b-3p _LIHC.png
SLMAP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015817
Fusion event
HBV-SLMAP integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57863013/57877286 (Hg38)
End
57863013/57877286 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLMAP
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-let-7g/Upstream/2024692; hsa-mir-12124/Downstream/2740519;
Nearest TSS
ENST00000440867/Upstream/12700; ENST00000461354/Downstream/12705;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/120023, chr3-CpG: 90/Downstream/130825
Upstream sequence
AGCAACATCAATTCAATGCATTACTCCAAAT
Junction sequence
AGCAACATCAATTCAATGCATTACTCCAAATAACCTCCTCCCCCAACTCCTCCCACTCAGTACACACACAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate