Basic Information
VIS ID
TVIS10015818
Fusion event
HBV-chr5 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12322895/12322783 (Hg38)
End
12322895/12322783 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10397/Upstream/1844638; hsa-mir-103a-1/Downstream/2503146;
Nearest TSS
ENST00000502646/Upstream/418740; ENST00000505877/Downstream/251854;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/418192, chr5-CpG: 46/Downstream/472077
Upstream sequence
ATGTTGTAAAACAGAACTAAAAGGAAATTATAC
Junction sequence
ATGTTGTAAAACAGAACTAAAAGGAAATTATACAAGACCTTGGGCGAGACCTGGTGAGCGTTCACAGTGGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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