Basic Information
VIS ID
TVIS10015829
Fusion event
HBV-chr2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
GRCh37/hg19
Start
57483218/57256083 (Hg38)
End
57483218/57256083 (Hg38)
Orient
-
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1301/Upstream/1255288; hsa-mir-10b/Downstream/3131279;
Nearest TSS
ENST00000437798/Upstream/1070313; ENST00000463222/Downstream/651568;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1070679, chr2-CpG: 81/Downstream/790424
Upstream sequence
TGAATATAATAGTTTTTAATGGTGCCAAAGCTT
Junction sequence
TGAATATAATAGTTTTTAATGGTGCCAAAGCTTTGAAAAAGTTGCATGGTGCTGGTGAACAGACCAATTTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate