Basic Information
VIS ID
TVIS10015833
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1
Start
1724
Orient
-
Integrated sequence
CGCCCACAGGAACCTGCCCAAGGTCTTGCATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTGTTT| |ACTGAGTGGGAGGAGTTGGGGGAGGAGGTTAGGTTAATGATCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTGTGTTCACCAGCACCATGCAACTTTT
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1298846/1298731 (Hg38)
End
1298846/1298731 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/235757; hsa-mir-10397/Downstream/10579;
Nearest TSS
ENST00000502646/Upstream/3662; ENST00000605200/Downstream/23098;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2876, chr5-CpG: 18/Downstream/36231
Nearby gene
TERT ;
Upstream sequence
CCTGCCATGGGGTGAAATTCTTTCTTTTTGA
Downstream sequence
TGAGGTCGCT
Junction sequence
CCTGCCATGGGGTGAAATTCTTTCTTTTTGAAAATACACAGGCTTTGAAGGATGCCTCAAGTGAGGTCGCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate