Basic Information
VIS ID
TVIS10015840
Fusion event
HBV-chr8 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
52209391/51296831 (Hg38)
End
52209391/51296831 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-124-1/Upstream/8400556; hsa-mir-10400/Downstream/10417957;
Nearest TSS
ENST00000518652/Upstream/39143; ENST00000521612/Downstream/43354;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1386531, chr8-CpG: 98/Downstream/111771
Nearby gene
PXDNL(+) ;
Upstream sequence
GGAGATACCTGGTTCTTAGTCAAGTAGATGATA
Junction sequence
GGAGATACCTGGTTCTTAGTCAAGTAGATGATACTGGTGAACAGACCAATTTATGCCTACAGCCTCCTAGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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