Basic Information
VIS ID
TVIS10015846
Fusion event
HBV-chr17 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
14551118/14647801 (Hg38)
End
14551118/14647801 (Hg38)
Orient
-
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/1104155; hsa-mir-10226/Downstream/603826;
Nearest TSS
ENST00000595228/Upstream/273662; ENST00000455092/Downstream/77928;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/302397, chr17-CpG: 77/Downstream/612812
Upstream sequence
ATGTTGCTTAAACATCTGCAATATATTGGT
Junction sequence
ATGTTGCTTAAACATCTGCAATATATTGGTTGGGGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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