LRFN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015852
Fusion event
HBV-LRFN2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
40453500/40485761 (Hg38)
End
40453500/40485761 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
LRFN2
Nearest miRNA
hsa-mir-1236/Upstream/1411380; hsa-mir-10398/Downstream/1112962;
Nearest TSS
ENST00000381078/Upstream/107424; ENST00000470917/Downstream/101704;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/93062, chr6-CpG: 132/Downstream/101095
Upstream sequence
GACCCGTGGCTGGTCAGCCCATGATAACCAA
Junction sequence
GACCCGTGGCTGGTCAGCCCATGATAACCAAGACAGACCAATTTATGCCTACAGCCTCCTAAATCTCCTCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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