SFTA3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015855
Fusion event
HBV-SFTA3 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr14
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
36964060/36494855 (Hg38)
End
36964060/36494855 (Hg38)
Orient
+
Location type
Intronic
Target gene
SFTA3
Nearest miRNA
hsa-mir-208a/Upstream/5480113; hsa-mir-1185-1/Downstream/457454;
Nearest TSS
ENST00000550708/Upstream/16889; ENST00000521292/Downstream/18315;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/668031, chr14-CpG: 62/Downstream/9109
Upstream sequence
TTTAATAAAGGACATCTTTTAAAAATAATAAAAGC
Junction sequence
TTTAATAAAGGACATCTTTTAAAAATAATAAAAGCAAAGTTGCATGGTGCTGGTGAACAGACCAATTTATG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate