Basic Information
VIS ID
TVIS10015856
Fusion event
HBV-LINC01833 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
45157820/44930681 (Hg38)
End
45157820/44930681 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01833
Nearest miRNA
hsa-mir-1301/Upstream/9459195; hsa-mir-10b/Downstream/2446994;
Nearest TSS
ENST00000437798/Upstream/7642; ENST00000260653/Downstream/4678;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/771, chr2-CpG: 18/Downstream/2073
Nearby gene
SIX3 ;
Upstream sequence
CGTTGCAACATTTATCACTCAAGCAGAAAAGC
Junction sequence
CGTTGCAACATTTATCACTCAAGCAGAAAAGCAGAAAAGTTGCATGGTGCTGGTGAACAGACCAATTTATG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate