SPON1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015857
Fusion event
HBV-SPON1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
14278369/14256823 (Hg38)
End
14278369/14256823 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPON1
Nearest miRNA
hsa-mir-210/Upstream/2093056; hsa-let-7a-2/Downstream/1712710;
Nearest TSS
ENST00000527297/Upstream/294134; ENST00000591785/Downstream/5624;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/292021, chr11-CpG: 33/Downstream/2372
Upstream sequence
CTAACCTTGGCCTTGTTTTTGATTATTTCTTGAGG
Junction sequence
CTAACCTTGGCCTTGTTTTTGATTATTTCTTGAGGATAGAAAAAGTTGCATGGTGCTGGTGAATAGACCAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate