Basic Information
VIS ID
TVIS10015860
Fusion event
HBV-chr1:q25.1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1825
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
173065047/173095907 (Hg38)
End
173065047/173095907 (Hg38)
Orient
+
Fragile sites / regions
FRA1G
Nearest miRNA
hsa-mir-101-1/Upstream/951263; hsa-mir-1182/Downstream/2872463;
Nearest TSS
ENST00000473358/Upstream/44944; ENST00000460950/Downstream/79596;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/562502, chr1-CpG: 100/Downstream/380932
Nearby gene
TNFSF18
Upstream sequence
TGCCGCACCTAGGCGGAGGAATGGGAAAATAGGCCCAGGAACGTGGACTTGGCCTGGGAAGTAAAGTCCTTGACTTTTGAAGCTGAGACCAAGGGTAAAG
Downstream sequence
CAGGTAGCTAGCCCAAGTGCCAGCTTGGGGCAGTGGGATGATGACAAGAGGGCCTTGTCCTGCAGTTGTTAGCGATGTGCTGGGCCGAGACAACCATAGC
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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