Basic Information
VIS ID
TVIS10015861
Fusion event
HBV-LINC01389 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
47847259/47381587 (Hg38)
End
47847259/47381587 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01389
Nearest miRNA
hsa-mir-12136/Upstream/2836035; hsa-mir-101-1/Downstream/3678250;
Nearest TSS
ENST00000473358/Upstream/47646; ENST00000335071/Downstream/26890;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/46833, chr1-CpG: 129/Downstream/34637
Nearby gene
CMPK1
Upstream sequence
TAAGATTCTATGATTATAAAAAAATTGATTTGTCTTTCAACAGTTTCAATCTAGACTATGGTTCCACGAGTACTAGTCCAGCAGTACCATATGAAATATT
Downstream sequence
ACACTTTAGCAAAAATACAATGAAGGAATAAGCTTATGGCTTATCTTTCCATATTTATCATGGAAGAAAATTGCTACCCAATAAAAGCAAGCCAAAAAAA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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