Basic Information
VIS ID
TVIS10015863
Fusion event
HBV-chr9:p12 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1631
Orient
+
Host Sequence
Chromosome
chr9
Cytoband
p12
Reference genome
GRCh37/hg19
Start
43410389/66731524 (Hg38)
End
43410389/66731524 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-101-2/Upstream/25497689; hsa-let-7a-1/Downstream/4078451;
Nearest TSS
ENST00000422679/Upstream/552094; ENST00000619435/Downstream/124902;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/460556, chr9-CpG: 19/Downstream/41077
Nearby gene
ATP5F1AP10(-6380) ;
Upstream sequence
tataactcaactctgttatgctcatttacatatgtgaattccaaagttcagagaaaataagtaacttgcccaagatccctcagctgtgagtagcagagcc
Downstream sequence
AGCATGGATCATCCATCGTATGAAGTGCTGAGTTGGATGATCAAACAGATCAGCTTATATTTTCCTTGTCTCATTCtaatattattcctacacagacatt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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