Basic Information
VIS ID
TVIS10015865
Fusion event
HBV-chr10:q23.1 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1860
Orient
-
Host Sequence
Chromosome
chr10
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
85767043/84007287 (Hg38)
End
85767043/84007287 (Hg38)
Orient
-
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-1265/Upstream/8454734; hsa-mir-107/Downstream/2257407;
Nearest TSS
ENST00000439456/Upstream/94365; ENST00000372134/Downstream/132153;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/442041, chr10-CpG: 51/Downstream/132015
Nearby gene
LOC105378399(-3806) ;
Upstream sequence
caaagaatcgaatggaattatcattgaatggagtcgaatggaatcaacatcaaacggaatcaaacggaattatcgaatggaatcgaagagaatcatcgaa
Downstream sequence
tggccacgaatggaatcatctaatggaatggaatggaataatccatggtcccgaatgcaatcatcatcgaatagaatcgaatggaatcatcgaatggact
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate