VISDB Viral Integration Site DataBase

VIS ID

TVIS10015866

Fusion event

HBV-KLF13 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1787

Orient

+

Chromosome

chr15

Cytoband

q13.3

Reference genome

Start

End

31673527/31381324 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-372-3p ; hsa-mir-302d-3p ; hsa-mir-125b-5p ; hsa-mir-31-5p ; hsa-mir-125a-5p ; hsa-mir-98-5p ; hsa-mir-335-5p ; hsa-mir-1200 ; hsa-mir-1257 ; hsa-mir-3163 ; hsa-mir-4324 ; hsa-mir-4329 ; hsa-mir-3662 ; hsa-mir-4452 ; hsa-mir-4524a-3p ; hsa-mir-892c-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-7113-5p ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-490-3p ; hsa-mir-613 ; hsa-mir-619-3p ; hsa-mir-6128 ; hsa-mir-8066 ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-766-5p ; hsa-mir-7515 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-9500 ; hsa-mir-7851-3p ; hsa-mir-7106-5p ; hsa-mir-1289 ; hsa-mir-765 ; hsa-mir-4722-5p ; hsa-mir-6124 ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6165 ; hsa-mir-6867-5p ; hsa-mir-6793-3p ; hsa-mir-378a-5p ; hsa-mir-630 ; hsa-mir-544b ; hsa-mir-506-5p ; hsa-mir-4435 ; hsa-mir-4663 ; hsa-mir-3194-5p ; hsa-mir-3670 ; hsa-mir-3190-5p ; hsa-mir-6858-3p ; hsa-mir-4438 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-556-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-2117 ; hsa-mir-6504-3p ; hsa-mir-148a-5p ; hsa-mir-6726-3p ; hsa-mir-4467 ; hsa-mir-566 ; hsa-mir-668-5p ; hsa-mir-18b-3p ; hsa-mir-6087 ; hsa-mir-4509 ; hsa-mir-1249-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-4755-5p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-6501-3p ; hsa-mir-3614-3p ; hsa-mir-193a-5p ; hsa-mir-4251 ; hsa-mir-539-5p ; hsa-mir-541-3p ; hsa-mir-548az-5p ; hsa-mir-548t-5p ; hsa-mir-654-5p ; hsa-mir-6761-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-92a-2-5p ; hsa-mir-1207-5p ; hsa-mir-2392 ; hsa-mir-4446-3p ; hsa-mir-4656 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-6132 ; hsa-mir-6836-5p ; hsa-mir-6869-5p ; hsa-mir-7150 ; hsa-mir-8077

Nearest miRNA

hsa-mir-1268a/Upstream/316183; hsa-mir-10393/Downstream/3000745;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/8987, chr15-CpG: 98/Downstream/10457

Nearby gene

Upstream sequence

cttcacagactaatacaACCCGAGAGAAATTCTTTAGGAGTCTGACTCCTATAGAACTAGTTAAACAACAGTGGATACATtttagaattaagctgaaaaa

Downstream sequence

cagggctgcttccttctggagtcttgttttccttcccagcttgtagaggccacctacgttccttggcttgtggcctcctccactgtcttcaaatccatca