Basic Information
VIS ID
TVIS10015870
Fusion event
HBV-chr4:p14 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1429
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
35991775/35990153 (Hg38)
End
35991775/35990153 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12113/Upstream/7170485; hsa-mir-1243/Downstream/436213;
Nearest TSS
ENST00000502981/Upstream/1321387; ENST00000502245/Downstream/55881;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/5266933, chr4-CpG: 100/Downstream/253856
Nearby gene
ARAP2
Upstream sequence
GTTATTTCCCCTTTGATCCCCAGGCTCTGGCCCCTAGCTGTAGCCTCTTTTTCCTcctccctctcttctcctctccttccctccctctctccttccttcT
Downstream sequence
ttgtaatgtatgtaacaaaatatagataacaaccatagcacaaaaaacaggggaagggaatgaaaatattttagagaaagtttctatcatccattggaat
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate