Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015871
Fusion event
HBV-GTF2IP1 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1755
Orient
+
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
Start
End
74614231/75198517 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/602491; hsa-mir-10399/Downstream/716680;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/40553, chr7-CpG: 134/Downstream/38319
Upstream sequence
caaactctaaatgtttaagttctaaatgtttaaatctgaggattggtctttagactacttcacttctctatctatactcatttcctatatgaagtcattc
Downstream sequence
aaagtgttgggattacaggcgtgagcctccacgcctggccCTAATTTTGTATTCTTAAAGCAGGCCTCCCAGGCCCCGTGAACTTGGCTCTGCCCTTTAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.