Basic Information
VIS ID
TVIS10015873
Fusion event
HBV-NCOR1P2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1820
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
21536937/22069613 (Hg38)
End
21536937/22069613 (Hg38)
Orient
-
Location type
Intronic
Target gene
NCOR1P2
Nearest miRNA
hsa-mir-1180/Upstream/2725039; hsa-mir-10226/Downstream/5224297;
Nearest TSS
ENST00000595228/Upstream/377090; ENST00000578881/Downstream/196716;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/225150, chr17-CpG: 22/Downstream/147656
Nearby gene
LINC02693
Upstream sequence
aagcctgcgcaggcctgaactacagccacctgggcaccatagcgaatgttatgagataagcccgtgcaaggcacttaagtaaaacctaggtaacagccat
Downstream sequence
tgtcatgattggatgttgaattttgCTTGTGTTGTCCCCCTCCTACACCAGTGTTATTCATCTGATTACCAATTTTCCGGATTATTGTTGCTGGTGTTTT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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