Basic Information
VIS ID
TVIS10015883
Fusion event
HBV-chr3:p26.3 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1820
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
1482111/1440427 (Hg38)
End
1482111/1440427 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7g/Downstream/3809750;
Nearest TSS
ENST00000440867/Upstream/39142; ENST00000490876/Downstream/547043;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1131217, chr3-CpG: 182/Downstream/657918
Nearby gene
CNTN6
Upstream sequence
aggagaattgcttgaacccaggaggcagaggttgcagtgagccgaggctgaggcaggagaattgcttgaacccgggagacagaggttgcagtgagccacg
Downstream sequence
taagttcatcccaaatgaataatgatttaatcaatcgtgtctacataatgaagcctccattaaaaaaaaaaaaagagggacatatttcggaggaacttcc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate