Basic Information
VIS ID
TVIS10015884
Fusion event
HBV-chr3:q25 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1820
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
q25
Reference genome
GRCh37/hg19
Start
1482107/1440423 (Hg38)
End
1482107/1440423 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7g/Downstream/3809754;
Nearest TSS
ENST00000440867/Upstream/39138; ENST00000490876/Downstream/547047;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1131213, chr3-CpG: 182/Downstream/657922
Nearby gene
CNTN6
Upstream sequence
CAAAGTAAATATGGAAACAAACTAATAGGAAATACAAGTATTAAGTTAACTTTAGAGAAAACTTATCTTTTTCCAGCAACGAATGTCTTTTTAAAATTAA
Downstream sequence
aggttaagttcatcccaaatgaataatgatttaatcaatcgtgtctacataatgaagcctccattaaaaaaaaaaaaagagggacatatttcggaggaac
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate