VISDB Viral Integration Site DataBase

VIS ID

TVIS10015885

Fusion event

HBV-ZNF652 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1671

Orient

+

Chromosome

chr17

Cytoband

q23.33

Reference genome

Start

End

47431923/49354561 (Hg38)

Orient

-

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-132-3p ; hsa-mir-128-3p ; hsa-mir-221-3p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-548c-3p ; hsa-mir-203a-3p ; hsa-mir-7703 ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-26a-1-3p ; hsa-mir-26a-2-3p ; hsa-mir-6731-3p ; hsa-mir-4639-5p ; hsa-mir-5580-3p ; hsa-mir-421 ; hsa-mir-3065-5p ; hsa-mir-548s ; hsa-mir-3190-5p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-4695-3p ; hsa-mir-548v ; hsa-mir-379-3p ; hsa-mir-382-5p ; hsa-mir-218-5p ; hsa-mir-431-5p ; hsa-mir-654-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-571 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-219a-1-3p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4658 ; hsa-mir-6790-5p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-187-5p ; hsa-mir-4745-5p ; hsa-mir-4666a-3p ; hsa-mir-4481 ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-222-3p ; hsa-mir-140-5p ; hsa-mir-4798-5p ; hsa-mir-889-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-302f ; hsa-mir-5692a ; hsa-mir-580-3p ; hsa-mir-124-5p ; hsa-mir-539-5p ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4272 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3927-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-4673 ; hsa-mir-766-3p ; hsa-mir-4645-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4742-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-508-5p ; hsa-mir-7641 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-138-1-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-660-3p ; hsa-mir-4284 ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1304-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-1228-5p ; hsa-mir-513b-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-624-3p ; hsa-mir-5583-3p ; hsa-mir-3974

Nearest miRNA

hsa-mir-10226/Upstream/66107; hsa-mir-1250/Downstream/156256;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/93930, chr17-CpG: 122/Downstream/6983

Upstream sequence

TGGGGAGGGCAGTGGGGAGGGGGCACGGGTGAGATGGTTCTGACTGTTGCACGAAGAGCCCCAGACAGGAATGGAGGGGACTGGAGTGTCCTGCCACAGG

Downstream sequence

gatcacgccactgcacctcagcctgggcatggaagcaagactccgcctcaaaaaaaaaaaacaaaaaaacaaaaaaacaaaaaaaACCTGTCCACTAAAA