Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015887
Fusion event
HBV-SLC6A18 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1834
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
Start
End
1240477/1240362 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/177388; hsa-mir-10397/Downstream/68948;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/13172, chr5-CpG: 16/Downstream/1967
Upstream sequence
CATTCCCTGGGGCATGCGCATCTCATGGGGAAAATCAAGAGCCTTAGAGGGCAGGCCTGGCGGTGCCCACACATTACAGGCTTCTGCTTGTGCCATGTCT
Downstream sequence
GAGGCCATTCTGAGACTCCAGGACTGGCAGCAGCAGCCCTTGGGTCAGAGAAGGGGCATCCCAGGCGGGAGAGAGGGTCAAGGAGGGAAGCCCCCTCCTC
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.