Basic Information
VIS ID
TVIS10015890
Fusion event
HBV-LOC102724832 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1824
Orient
-
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74142783/73277066 (Hg38)
End
74142783/73277066 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724832
Nearest miRNA
hsa-mir-12113/Upstream/7000138; hsa-mir-1243/Downstream/3296502;
Nearest TSS
ENST00000502981/Upstream/17857; ENST00000510166/Downstream/120048;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/17653, chr4-CpG: 20/Downstream/343261
Nearby gene
ANKRD17
Upstream sequence
ATTGAGAAAGATCTAGAACTTGTGATTTTGGGACAGGGCAGTTCTAAATGGGGCCTATAGTGAGCCAGTTTGGGCACCTGTGGCATGATGCtatgtatgg
Downstream sequence
caatggatacatatgcagccttgtcacatgggcatactgtgtgatgctgaggtttgaagtatgattaatccgtcacccaggtagtgagcataatgcccaa
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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