VISDB Viral Integration Site DataBase

VIS ID

TVIS10015892

Fusion event

HBV-SLC28A1 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1712

Orient

+

Chromosome

chr15

Cytoband

q25.3

Reference genome

Start

End

85449263/84906032 (Hg38)

Orient

+

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1225-5p ; hsa-mir-4703-3p ; hsa-mir-1244 ; hsa-mir-4506 ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-3194-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6849-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-1261 ; hsa-mir-421 ; hsa-mir-4789-5p ; hsa-mir-4790-3p ; hsa-mir-1245b-3p ; hsa-mir-4709-5p ; hsa-mir-5683 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6516-5p ; hsa-mir-432-3p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-1193 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-490-5p ; hsa-mir-4802-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-433-3p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1224-3p ; hsa-mir-3130-3p ; hsa-mir-3682-5p ; hsa-mir-4275 ; hsa-mir-4470 ; hsa-mir-4793-3p ; hsa-mir-497-3p ; hsa-mir-5197-5p ; hsa-mir-544a ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548t-3p ; hsa-mir-767-5p

Nearest miRNA

hsa-mir-10393/Upstream/1838617; hsa-mir-11181/Downstream/474564;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/88398, chr15-CpG: 248/Downstream/74249

Upstream sequence

cagtggcttaaagcaacacaaatttattcttttattctcttgcagctctggaggtcagaagtgcaaaacaagtcttacagggctaaaatccaggtgtcat

Downstream sequence

ctttcaagaaggagtctcgctttgtcacccaggctggagtgcagtggtgcaatcttggcttgctgcaacctccacctccctggttcaagcaattctcctg