Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015893
Fusion event
HBV-DPP10 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1586
Orient
+
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
End
116472918/115715342 (Hg38)
Orient
-
Location type
Intron
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/1993974; hsa-mir-10b/Downstream/11708195;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/552153, chr2-CpG: 48/Downstream/2099194
Upstream sequence
CTAAACCTTCAGATATCTCAGAGAAGATGGAAACTATCAAAAATGAGTACAGGCCATTGAATTTGAGGAAAGAAATGTCTCTGGTGACCTCTGAGTGTAC
Downstream sequence
aaaaaaaaaaaaaaaaaaaaagaaagaaaagaaaaagaaaaaTCTACTGGAACTTGTTGGCCCAGCTAAAATACCATGGCTCATCTGAAGCCTTTTTTTG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.