Basic Information
VIS ID
TVIS10015896
Fusion event
HBV-chrY:q11.23 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1819
Orient
+
Host Sequence
Chromosome
chrY
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
28502748/26356601 (Hg38)
End
28502748/26356601 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12120/Upstream/12877335;
Nearest TSS
ENST00000430575/Upstream/628111;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/891660, chrY-CpG: 32/Downstream/52787
Nearby gene
PPP1R12BP1(-7923) ; RNU6-1314P(+4388) ;
Upstream sequence
gggtgatcagtgcagagatatgtgacgaggcccctttaagcagagcctagacaatagttacatcacctgagtgatcagtgcagagatctgacgcaatgcc
Downstream sequence
ccatccaagtgaaaataagaattctggaaacagctaccaccatgagcttgacagcatcccagtattcacttttctgataagatctgtttgactatcaaca
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate