KIF24 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015897
Fusion event
HBV-KIF24 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1561
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
34295985/34295987 (Hg38)
End
34295985/34295987 (Hg38)
Orient
-
Location type
Intron
Target gene
KIF24
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-1229-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-mir-101-2/Upstream/828052; hsa-let-7a-1/Downstream/1312107;
Nearest TSS
ENST00000422679/Upstream/75548; ENST00000346365/Downstream/15384;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/116505, chr9-CpG: 54/Downstream/22297
Upstream sequence
catgcacacagggaggggaacatcacacacccgggcctatcgggggcttgggggctacaggaggtatagcattaggagaaatacctaacacatgtggggc
Downstream sequence
ataaagTGTAAAGAAAAAAAAGCAGGCTCTGGAAGCATTCTTCCTGAGCATGAATTTTACATTCCATTCTTGCAAAGAAAAAAAAAAATGAGGCTGCAAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate