Basic Information
VIS ID
TVIS10015900
Fusion event
HBV-LOC110806263 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1822
Orient
+
Host Sequence
Chromosome
chr5
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
1295758/1295643 (Hg38)
End
1295758/1295643 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/232669; hsa-mir-10397/Downstream/13667;
Nearest TSS
ENST00000502646/Upstream/574; ENST00000605200/Downstream/26186;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Nearby gene
TERT
Upstream sequence
AGTGATACAGATTTTTCAAACTGCTAAATGGTGAGAACAAAATATATAacctctctaggcacacagattctctgaaaaataaaggaattgttctttatga
Downstream sequence
CGCGGGACCTCCCGGAGTGCCTCCCTGCAACACTTCCCCGCGACTTGGGCTCCTTGACACAGGCCCGTCATTTCTCTTTGCAGGTTCTCAGGCGGCGAGG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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