CAMTA1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015901
Fusion event
HBV-CAMTA1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1789
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
7735733/7675673 (Hg38)
End
7735733/7675673 (Hg38)
Orient
+
Location type
Intron
Fragile sites / regions
FRA1A
Target gene
CAMTA1
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p
Nearest miRNA
hsa-mir-12136/Upstream/1245777; hsa-mir-101-1/Downstream/1190829;
Nearest TSS
ENST00000473358/Upstream/234119; ENST00000476864/Downstream/19171;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/10558, chr1-CpG: 98/Downstream/4410
Nearest cancer related gene
CAMTA1(TSG, No orient, 0)
Upstream sequence
aaaaaaaagtcaatcctctctgtacatatgcgtagctgcattcttggaaaattcagcccaaaagctatgttgccagatgctttgcattcgtatgtaagac
Downstream sequence
tgatttaggttctaagccccaatcattataacttttgtccacctagacattctacagtctgtgaaagattgggacaatcttttgttgttcaggaccatcc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate