Basic Information
VIS ID
TVIS10015902
Fusion event
HBV-chr7:p11.2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
-
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
57446860/57379153 (Hg38)
End
57446860/57379153 (Hg38)
Orient
+
Fragile sites / regions
FRA7A
Nearest miRNA
hsa-mir-1183/Upstream/423289; hsa-mir-10399/Downstream/25872;
Nearest TSS
ENST00000635602/Upstream/156979; ENST00000563054/Downstream/25618;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/121985, chr7-CpG: 38/Downstream/25457
Nearby gene
MIR3147
Upstream sequence
TAGAACTTTAACATTTTAACATATTTGAAAACATAAAGTATGAGTCAAAACTCAGAGATATGggcagggtgcatttgctcatgcctgtaatcctagcact
Downstream sequence
CTTTAGAGCATGAGCCCCACCTCCCACCTCCCGCCACTTGGTGCAGTCCAGCTGCTGGCAGAGAAGGTGGGGGTTGGGGAGGGACCCCTTGTCAGAGCCC
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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