ANO2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015903
Fusion event
HBV-ANO2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1664
Orient
-
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
5951302/5842136 (Hg38)
End
5951302/5842136 (Hg38)
Orient
-
Location type
Intron
Target gene
ANO2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-3649/Upstream/4181756; hsa-let-7i/Downstream/1121563;
Nearest TSS
ENST00000382841/Upstream/101013; ENST00000538418/Downstream/28300;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/14217, chr12-CpG: 46/Downstream/103047
Upstream sequence
AATTCCCCACACCAAAAGTGAAGAAGCATCAGTTATTTAAAAGAAAATCACAACTgccaggtggtggtgcaacctgtaatcccagctactcaggctgctg
Downstream sequence
aggtgggaggattgtttgagcccaggaatttgggtctagcttgggcaacatagtgagaccctgtgtctaatttttaaaaaataaatgaaataaaaaCATA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate