Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015905
Fusion event
HBV-LCN12 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
139846185/136951733 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/64930; hsa-mir-3621/Downstream/217453;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1492, chr9-CpG: 17/Downstream/1128
Nearby gene
Upstream sequence
CATTAGGTCTAAAAGTTATAACATTTAAGGCTGAATTGCCAAATGTTTAAAAATATAGATTTCTGTACCAGAAAAACTTTGGAAAAACTACATTAAttct
Downstream sequence
GCCGGTGCTTGGCTCAAGTCTTCACGAGGGGTTTAGGCAGGGCCATCTTGGGGACCCTGTGTACCATGTACTGTATTTAAAAAAAAAAAAAGTTACCTAT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.