Basic Information
VIS ID
TVIS10015907
Fusion event
HBV-chr9:q34.2 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1840
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
q34.2
Reference genome
GRCh37/hg19
Start
136346366/133481244 (Hg38)
End
136346366/133481244 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7a-1/Upstream/429185; hsa-mir-126/Downstream/898167;
Nearest TSS
ENST00000422679/Upstream/2107; ENST00000393060/Downstream/43702;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1602, chr9-CpG: 70/Downstream/53001
Nearby gene
SLC2A6
Upstream sequence
ATGACTAAAACTGTTCTTTTCACTTTCAAAAGAATTCACCATTCATCCCCTAGTCTAATTAGCCCATGAGAGGCTTGTCACTTAAAGGAGCTTGTTCCAT
Downstream sequence
GGCTCCCGCCAGCAAACGTGATGATTTACTTTCTGTGTTCTGTTCTGCTTCCTGTCTTGTCCCCCACCTACTCCCACCCAGACccgtcacctgagtgtca
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate