Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015908
Fusion event
HBV-UBXN8 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
546
Orient
-
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
Start
End
30611415/30753898 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-124-1/Upstream/796550; hsa-mir-10400/Downstream/10517150;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/25764, chr8-CpG: 41/Downstream/58036
Upstream sequence
tagatcaagaaaaaaaagagaggagacccaaataagcaaaataaaaatggagacactgcacctgatagcacagaaagatcattaggcactattatgaaca
Downstream sequence
ggtagctggaactacaggcacacacacaccaccatgctcagctaatttttAAAAAATTTTGggccaggcgtggtggtgcacgcctgtaatcccagcactt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.