Basic Information
VIS ID
TVIS10015910
Fusion event
HBV-chr14:q24.3 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Orient
+
Host Sequence
Chromosome
chr14
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
76997666/76531323 (Hg38)
End
76997666/76531323 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-208a/Upstream/2051119; hsa-mir-1185-1/Downstream/734895;
Nearest TSS
ENST00000550708/Upstream/31677; ENST00000554237/Downstream/195389;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/39592, chr14-CpG: 135/Downstream/229903
Nearby gene
ESRRB
Nearest cancer related gene
ESRRB(TSG, No orient)
Upstream sequence
TTTTTCTTAATCTGGAAGTTAAGAAAATCACAGAAGAATAGTAAAACAATGTGCCTGCTCAACATGTTACCCAAAGTGAATTCCAGAAGTTGTTCATAAT
Downstream sequence
tccttaatacagctgcaaagacactttttttcaaataagatcaagttcacaggttccagggcatgggcctatcttttggtggccaccattcaactcacta
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate