Basic Information
VIS ID
TVIS10015912
Fusion event
HBV-LOC107987355 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1633
Orient
-
Host Sequence
Chromosome
chrY
Cytoband
q11.221
Reference genome
GRCh37/hg19
Start
17442168/15330288 (Hg38)
End
17442168/15330288 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107987355
Nearest miRNA
hsa-mir-12120/Upstream/1851022;
Nearest TSS
ENST00000430575/Upstream/526255; ENST00000421205/Downstream/2170670;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/499980, chrY-CpG: 91/Downstream/125411
Upstream sequence
atgcccctttaggcagagcttagaccagagttacatcacctgggtgatcagtgcagagatatgtcacaatgcccccacaggcaaatccaagacaagagtc
Downstream sequence
AGGAAAGCTTCCTAATGAATTCTCTCTGTGTCATTTTATTCATAAAAAGCACATGACGGGCATTCTTAGCATGCATATCAAAGTGTATATACGTAAATTA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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