NCOR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015922
Fusion event
HBV-NCOR1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
16001031/16097717 (Hg38)
End
16001031/16097717 (Hg38)
Orient
+
Location type
Intron
Target gene
NCOR1
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-let-7b-5p ; hsa-mir-34a-3p
Nearest miRNA
hsa-mir-1253/Upstream/846021; hsa-mir-10226/Downstream/184297;
Nearest TSS
ENST00000595228/Upstream/5799; ENST00000463810/Downstream/24918;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/97343, chr17-CpG: 118/Downstream/117244
Upstream sequence
GGACCTCAAAGGCCAATTTACTGAACATCAAATAAACCTTAAGAAAGAAAGAGATGGGGCTGTGGTCGCCTGGTGACAACCATATCTGCTTTGCTCCAGC
Downstream sequence
ctaagttctctgaggcattttagcaaattatggaacctgacgaggagagtcggaggaatccccagtctgcagcctagtcagaagcgtgagtaacctgggg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate