Basic Information
VIS ID
TVIS10015926
Fusion event
HBV-BAIAP2-DT integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1823
Orient
-
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79004903/81031103 (Hg38)
End
79004903/81031103 (Hg38)
Orient
-
Location type
Intron
Target gene
BAIAP2-DT
Nearest miRNA
hsa-mir-10226/Upstream/611610; hsa-mir-1250/Downstream/94173;
Nearest TSS
ENST00000595228/Upstream/5600; ENST00000570913/Downstream/3470;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/26456, chr17-CpG: 19/Downstream/1681
Upstream sequence
CAGGCACTGCCGCGGACAGCCTGGGGGTGGGGCTTGAGGCGCGCGGGGCGGGACTCGCCACTCCAGCCTGCAGCGTCAGGTTTTGTCTCTGGGAACATCA
Downstream sequence
CAGCCCATCCAGGAAGCAAAGAAACGGTGCTCCAGACACCATGCGGATAGCTTCACCCGCCGACCCCGGCCAGGCCCAGCTGCTCCCACAGCACCTGGCA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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