Basic Information
VIS ID
TVIS10015927
Fusion event
HBV-LOC105376987 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1592
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
21147551/21106059 (Hg38)
End
21147551/21106059 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376987
Nearest miRNA
hsa-mir-12127/Upstream/968418; hsa-let-7g/Downstream/4558814;
Nearest TSS
ENST00000440867/Upstream/717810; ENST00000412369/Downstream/120246;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/919595, chr3-CpG: 86/Downstream/1265942
Upstream sequence
TTAGCATCAGCCCTGTCTGGGCATTTAGCTTCATGCTGCATGCAGGTGAGGAGAGAGAGGGAGGCCAAAGGGGGCCCACAAGCACACAAGGAGCCCTCCT
Downstream sequence
ggagactgcaggcaagtacacactgacaaagttgtgggaggaggctgcagttgggtacatgctggtggggtcctatctgccaaagctctctggtggttag
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate