Basic Information
VIS ID
TVIS10015940
Fusion event
HBV-chr9:p21.2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1826
Orient
+
Host Sequence
Chromosome
chr9
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
26341802/26341804 (Hg38)
End
26341802/26341804 (Hg38)
Orient
-
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/4829619; hsa-let-7a-1/Downstream/2521822;
Nearest TSS
ENST00000422679/Upstream/275129; ENST00000523363/Downstream/405149;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/663118, chr9-CpG: 69/Downstream/550486
Nearby gene
LOC105375999(+4366) ;
Upstream sequence
TGACAACCTTTTTTGGTAAGATTAGAAGTTACTTGCTGATTGATATGTAGCATCCTTTGCTGTTTTCAGAAGATACTTGTTGTTTCAGTTAGTTTATTTC
Downstream sequence
GGAACCAATTTGGAGATGTCCTTGAAAACGAGGGGAGTATAGAATTTTCTCCAAAAGAAAATAAGAAACCTTTAAAGGATTGTATCTGCGGAGGGGCAAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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