VISDB Viral Integration Site DataBase

VIS ID

TVIS10015941

Fusion event

HBV-PHF7 integration

Validated

Yes

Detection method

Alu PCR and sequencing

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1694

Orient

+

Chromosome

chr3

Cytoband

p21.1

Reference genome

Start

End

52445738/52411722 (Hg38)

Orient

+

Location type

Intron

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-574-5p ; hsa-mir-675-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-6760-3p ; hsa-mir-586 ; hsa-mir-3152-3p ; hsa-mir-4440 ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-5011-3p ; hsa-mir-7977 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-4284 ; hsa-mir-338-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-642a-5p ; hsa-mir-196a-3p ; hsa-mir-873-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4469 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-759 ; hsa-mir-3613-3p ; hsa-mir-5586-3p ; hsa-mir-4797-5p ; hsa-mir-661 ; hsa-mir-939-3p ; hsa-mir-4485-5p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-1247-3p ; hsa-mir-1255b-2-3p ; hsa-mir-1273e ; hsa-mir-25-5p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-508-3p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6807-5p

Nearest miRNA

hsa-let-7g/Upstream/117414; hsa-mir-12124/Downstream/434741;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/634, chr3-CpG: 23/Downstream/32786

Upstream sequence

ctaaaagtgtggagatgactttggaagtgggtaatgagtagaagtgaaagagttttgaagtgcatgctagaaaaacatatgttacagtgaaaggcctgaa

Downstream sequence

CTCCCCGTTAACCAGTGAAACTGTACATTTGTTTTACAGTTTGTTTACTAATGAAAACAGGTAACAGCCGGAGTTGGCTGACATTGGAAATAGGAGACAA