Basic Information
VIS ID
TVIS10015952
Fusion event
HBV-chr1:p36.11 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1860
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
11611521/11551464 (Hg38)
End
11611521/11551464 (Hg38)
Orient
-
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1584006; hsa-mir-101-1/Downstream/477694;
Nearest TSS
ENST00000473358/Upstream/17788; ENST00000453135/Downstream/58067;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/14899, chr1-CpG: 40/Downstream/97246
Nearby gene
DISP3
Upstream sequence
tcttttttttttttttgagacagagagtcactctgttgcccaggctggagtacaggggcaccatctctcggctcacagcaacctccacctcctgggttcc
Downstream sequence
agcaattctcctgcctcagcctcctgagtagctgggattacaggtgcactccaacacgcctggctaatttttttttttttttttttttttggatttttag
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate