Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015954
Fusion event
HBV-DNAH5 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1799
Orient
+
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
Start
End
13953497/13953388 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10397/Upstream/3475243; hsa-mir-103a-1/Downstream/872541;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/143164, chr5-CpG: 48/Downstream/58122
Nearby gene
Upstream sequence
CCTGACCAGGAGGATCCCTGAGAGTATCATGAGAGGTTTAGGGCTTACCCAGCAGGTACAGGGGACTGCAGAAGGTCCCAGGACAGGAAGTGAGATGACA
Downstream sequence
AACTCTTCTACTAGAAACAGTTAACATTGGGCCTTATATTCAAATGTAGCCCCTGGGTGGGTTCAAACATTCAAATGAAATGGCACAATTAACTACATAA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.