Basic Information
VIS ID
TVIS10015956
Fusion event
HBV-chr1:q41 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1768
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
220469814/220296472 (Hg38)
End
220469814/220296472 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/95853; hsa-mir-1182/Downstream/3960568;
Nearest TSS
ENST00000473358/Upstream/24018; ENST00000563417/Downstream/63711;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/23881, chr1-CpG: 105/Downstream/231647
Nearby gene
AURKAP1
Upstream sequence
GAAATGTCTGTCCCAGGTGAATTTTCTCTGTCCTCTGTAAACCAGACAACATTTGAATAAACAGAAACAACCTTGGAAAATGATGCTTTCTCATGCCAAA
Downstream sequence
CTTGATAGAACTCACAAACTTCTTGTAGCCACTACCCAAATCTATTGCTATAATAGAATCAAGGTATTAGGGCCTGGGCAGGGATAAACCCACCCAGGAT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate