Basic Information
VIS ID
TVIS10015958
Fusion event
HBV-CFAP299 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1638
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
81579841/80658687 (Hg38)
End
81579841/80658687 (Hg38)
Orient
+
Location type
Intron
Target gene
CFAP299
Nearest miRNA
hsa-mir-12113/Upstream/4083061; hsa-mir-1243/Downstream/2094650;
Nearest TSS
ENST00000502981/Upstream/322906; ENST00000621014/Downstream/211362;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/271889, chr4-CpG: 88/Downstream/372100
Upstream sequence
tgcaatggtgtgatcttgactcactgcaatctctgcctcgctggtccaagcaattctcatgccttagcccctccaaatagctggaattacaggtgtgcac
Downstream sequence
CTCTATTTCATCCTCTCTCAGATAGTAAGAATAGTGCTTATCATAACCATATCAATAGGGAAGTGTGAAAGACCTTGAAACTGTAGCATACTATCCACTT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate