VISDB Viral Integration Site DataBase

VIS ID

TVIS10015959

Fusion event

HBV-CRAMP1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Not given

Start

1738

Orient

+

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

1723992/1673991 (Hg38)

Orient

-

Location type

Exon

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-4642 ; hsa-mir-6780a-3p ; hsa-mir-4775 ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-149-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-5196-3p ; hsa-mir-3529-3p ; hsa-mir-590-3p ; hsa-mir-526b-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5093 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-570-3p ; hsa-mir-454-5p ; hsa-mir-3675-3p ; hsa-mir-942-3p ; hsa-mir-651-3p ; hsa-mir-3646 ; hsa-mir-937-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-323a-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-1-5p ; hsa-mir-6823-5p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6715b-3p ; hsa-mir-4326 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3690 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-584-3p ; hsa-mir-6715a-3p ; hsa-mir-619-3p ; hsa-mir-490-3p

Nearest miRNA

hsa-mir-3176/Upstream/903714; hsa-mir-11401/Downstream/60994;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/17051, chr16-CpG: 104/Downstream/3947

Upstream sequence

CCCACGGCCTCCGGACGGTGTCTGGGCCCCGACAGTGCGGGGCTTATCACTTCACTCCTGAGACACCTGATTCTCTTCATGTCCCTAGCTTGGTGCTTTG

Downstream sequence

GCTCTGTTTGATGGTGGTGGAGGCGGCCCCGCTGTCAGTGACCTGTCCCAGTGACCACACGTCCTGGTGGCGGATGAAGCCCTCTTCGAGCTAGAGAAAA