Basic Information
VIS ID
TVIS10015962
Fusion event
HBV-LOC107986057 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1713
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
172232/130549 (Hg38)
End
172232/130549 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986057
Nearest miRNA
hsa-let-7g/Downstream/5119628;
Nearest TSS
ENST00000440867/Upstream/76203; ENST00000486881/Downstream/66047;
Nearest CpG islands
None/Target, None/Upstream, chr3-CpG: 148/Downstream/66159
Nearby gene
CHL1
Upstream sequence
gtgcttgggggctacttcagatagacatcaaaaaaggcttttctgaggatgtaacatttgcgctaaaatctaaatgacatgattgaaccaacgataggaa
Downstream sequence
ctcctggtggtagctaaaacataagatcacaacagaaacacaagacagctcttgaggtctaggcacagatcaggcatatattcactctggtcttattcta
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate