Basic Information
VIS ID
TVIS10015972
Fusion event
HBV-chr9:q33.2 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22962577
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1818
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
125568587/122806308 (Hg38)
End
125568587/122806308 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7a-1/Upstream/686141; hsa-mir-12126/Downstream/305238;
Nearest TSS
ENST00000422679/Upstream/6185; ENST00000402311/Downstream/20378;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/458943, chr9-CpG: 42/Downstream/21828
Nearby gene
OR1K1
Upstream sequence
AGAAAAGGGAAAGACTGAGGCCTCTGTTTTGGCAGGAATTTCCCCTACTGCTGCAGGAACTGGGCACCAGATTGTGGAGCTGAGGCACAGTGAGGTGGAG
Downstream sequence
gagatggggtttcaccatgttggccaggctggtctcaaactcccaacatcaggtgatcctcccgccttggcctcccaaagtgctgggattacaggcgtga
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate